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| author | Pjotr Prins | 2020-10-27 12:17:23 +0000 |
|---|---|---|
| committer | Pjotr Prins | 2020-10-27 12:17:23 +0000 |
| commit | 73824fe1f94cb965f6de9d5b43bf2eb48241d3ea (patch) | |
| tree | e89f1e2202f23d3e8679faf99eab029f6ac749f5 /doc/INSTALL.md | |
| parent | bef48abab5e8596703dd825b2d920ea25314d868 (diff) | |
| download | bh20-seq-resource-73824fe1f94cb965f6de9d5b43bf2eb48241d3ea.tar.gz bh20-seq-resource-73824fe1f94cb965f6de9d5b43bf2eb48241d3ea.tar.lz bh20-seq-resource-73824fe1f94cb965f6de9d5b43bf2eb48241d3ea.zip | |
Updating docs
Diffstat (limited to 'doc/INSTALL.md')
| -rw-r--r-- | doc/INSTALL.md | 6 |
1 files changed, 5 insertions, 1 deletions
diff --git a/doc/INSTALL.md b/doc/INSTALL.md index e31b7d7..df825c6 100644 --- a/doc/INSTALL.md +++ b/doc/INSTALL.md @@ -38,7 +38,11 @@ Note that python-pyshex is packaged in http://git.genenetwork.org/guix-bioinformatics/guix-bioinformatics so you'll need it to the GUIX_PACKAGE_PATH - see the README in that -repository. +repository. E.g. + +```sh +env GUIX_PACKAGE_PATH=~/iwrk/opensource/guix/guix-bioinformatics/ ~/opt/guix/bin/guix environment -C guix --ad-hoc git python python-flask python-pyyaml python-pycurl python-magic nss-certs python-pyshex python-pyyaml --network openssl python-pyshex python-pyshexc minimap2 python-schema-salad python-arvados-python-client --share=/export/tmp -- env TMPDIR=/export/tmp python3 bh20sequploader/main.py --help +``` ### Using the Web Uploader |