| Branch | Commit message | Author | Age | |
|---|---|---|---|---|
| analysis-refactor | Add "validated" and "running workflows" tables to status | Peter Amstutz | 5 years | |
| fasta-subset-from-query | Extract PDH from result and construct URIs from that | Peter Amstutz | 4 years | |
| generate-cwl | Use default output of pipeline | Arun Isaac | 4 years | |
| master | Jetson test sequence | Pjotr Prins | 4 years | |
| new_assembly_method_field | added the assembly_method field to distinguish de-novo assemblies from refere... | AndreaGuarracino | 4 years | |
| pangenome_workflow_abpoa | abPOA works better starting from shorter sequences | AndreaGuarracino | 4 years | |
| upload-download-status | Give uploader an option to trust local validation (for batch imports) | Peter Amstutz | 5 years | |
| uuid-for-resource | Use arvados uuids for RDF subjects. | Peter Amstutz | 4 years | |
| yamlfa2ttl | sample_id in the FASTA has to match the sample_id in the YAML | AndreaGuarracino | 4 years | |
| Age | Commit message | Author | ||
| 2020-11-10 | Use arvados uuids for RDF subjects.•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> uuid-for-resource | Peter Amstutz | ||
| 2020-11-09 | Merge pull request #105 from arvados/fasta-subset-from-query•••Extract subset of the all-sequences fasta by running a sparql query. Also includes some tweaks to the permalinks. | Peter Amstutz | ||
| 2020-11-09 | Extract PDH from result and construct URIs from that•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> fasta-subset-from-query | Peter Amstutz | ||
| 2020-11-09 | Make resource link work for both portable data hashes and sample id•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | Peter Amstutz | ||
| 2020-11-09 | Make it so "pangenome analysis" only runs collect-seqs.•••Will ensure that metadata is kept up to date. GFA isn't being generated. Will introduce new workflow that uses from_sparql to analyze a subset. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | Peter Amstutz | ||
| 2020-11-09 | Rename schema param to metadataSchema•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | Peter Amstutz | ||
| 2020-11-09 | Extract subset of the all-sequences fasta by running a sparql query.•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | Peter Amstutz | ||
| 2020-11-08 | Uploaded UTHSC sequences | Pjotr Prins | ||
| 2020-11-08 | UTHSC samples | Pjotr Prins | ||
| 2020-11-07 | Tests: added SPARQL test | Pjotr Prins | ||
| [...] | ||||
 |
index : bh20-seq-resource | |
| Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis |
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