From 73824fe1f94cb965f6de9d5b43bf2eb48241d3ea Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Tue, 27 Oct 2020 12:17:23 +0000 Subject: Updating docs --- doc/INSTALL.md | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) (limited to 'doc/INSTALL.md') diff --git a/doc/INSTALL.md b/doc/INSTALL.md index e31b7d7..df825c6 100644 --- a/doc/INSTALL.md +++ b/doc/INSTALL.md @@ -38,7 +38,11 @@ Note that python-pyshex is packaged in http://git.genenetwork.org/guix-bioinformatics/guix-bioinformatics so you'll need it to the GUIX_PACKAGE_PATH - see the README in that -repository. +repository. E.g. + +```sh +env GUIX_PACKAGE_PATH=~/iwrk/opensource/guix/guix-bioinformatics/ ~/opt/guix/bin/guix environment -C guix --ad-hoc git python python-flask python-pyyaml python-pycurl python-magic nss-certs python-pyshex python-pyyaml --network openssl python-pyshex python-pyshexc minimap2 python-schema-salad python-arvados-python-client --share=/export/tmp -- env TMPDIR=/export/tmp python3 bh20sequploader/main.py --help +``` ### Using the Web Uploader -- cgit v1.2.3