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authorPjotr Prins2020-07-21 11:33:54 +0100
committerPjotr Prins2020-07-21 11:33:54 +0100
commita259e9a1da5c56c100292c1cb4c5ef7941596611 (patch)
tree320b945e72d93ecf42bc096dbe72e4b224a1a4aa /bh20simplewebuploader
parent76be1c0da7593ae61c0935747d21b1ff5a844985 (diff)
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sequencer/mapper
Diffstat (limited to 'bh20simplewebuploader')
-rw-r--r--bh20simplewebuploader/api.py6
1 files changed, 4 insertions, 2 deletions
diff --git a/bh20simplewebuploader/api.py b/bh20simplewebuploader/api.py
index 65435ea..2a5529f 100644
--- a/bh20simplewebuploader/api.py
+++ b/bh20simplewebuploader/api.py
@@ -17,14 +17,15 @@ def fetch_sample_metadata(id):
PREFIX efo: <http://www.ebi.ac.uk/efo/>
PREFIX evs: <http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
- select distinct ?id ?seq ?date ?info ?specimen ?sequencer
+ select distinct ?id ?seq ?date ?info ?specimen ?sequencer ?mapper
{
?sample sio:SIO_000115 "%s" ;
sio:SIO_000115 ?id ;
evs:C25164 ?date .
?seq pubseq:technology ?tech ;
pubseq:sample ?sample .
- ?tech efo:EFO_0002699 ?sequencer .
+ ?tech efo:EFO_0002699 ?mapper ;
+ obo:OBI_0600047 ?sequencer .
optional { ?sample edam:data_2091 ?info } .
optional { ?sample obo:OBI_0001479 ?specimen } .
} limit 5
@@ -52,6 +53,7 @@ def sample(id):
'info': x['info']['value'],
'specimen': x['specimen']['value'],
'sequencer': x['sequencer']['value'],
+ 'mapper': x['mapper']['value'],
} for x in meta])
@app.route('/api/ebi/sample-<id>.xml', methods=['GET'])