From a259e9a1da5c56c100292c1cb4c5ef7941596611 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Tue, 21 Jul 2020 11:33:54 +0100
Subject: sequencer/mapper

---
 bh20simplewebuploader/api.py | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

(limited to 'bh20simplewebuploader')

diff --git a/bh20simplewebuploader/api.py b/bh20simplewebuploader/api.py
index 65435ea..2a5529f 100644
--- a/bh20simplewebuploader/api.py
+++ b/bh20simplewebuploader/api.py
@@ -17,14 +17,15 @@ def fetch_sample_metadata(id):
     PREFIX efo: <http://www.ebi.ac.uk/efo/>
     PREFIX evs: <http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#>
     PREFIX obo: <http://purl.obolibrary.org/obo/>
-    select distinct ?id ?seq ?date ?info ?specimen ?sequencer
+    select distinct ?id ?seq ?date ?info ?specimen ?sequencer ?mapper
     {
       ?sample sio:SIO_000115 "%s" ;
               sio:SIO_000115 ?id ;
               evs:C25164 ?date .
       ?seq    pubseq:technology ?tech ;
               pubseq:sample ?sample .
-      ?tech   efo:EFO_0002699 ?sequencer .
+      ?tech   efo:EFO_0002699 ?mapper ;
+              obo:OBI_0600047 ?sequencer .
       optional { ?sample edam:data_2091 ?info } .
       optional { ?sample obo:OBI_0001479 ?specimen } .
     } limit 5
@@ -52,6 +53,7 @@ def sample(id):
         'info': x['info']['value'],
         'specimen': x['specimen']['value'],
         'sequencer': x['sequencer']['value'],
+        'mapper': x['mapper']['value'],
     } for x in meta])
 
 @app.route('/api/ebi/sample-<id>.xml', methods=['GET'])
-- 
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