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-rw-r--r--bh20sequploader/bh20seq-schema.yml10
1 files changed, 5 insertions, 5 deletions
diff --git a/bh20sequploader/bh20seq-schema.yml b/bh20sequploader/bh20seq-schema.yml
index fc80080..c48ebce 100644
--- a/bh20sequploader/bh20seq-schema.yml
+++ b/bh20sequploader/bh20seq-schema.yml
@@ -13,7 +13,7 @@ $graph:
type: record
fields:
host_species:
- doc: Host species as defined in NCBITaxon (e.g. http://purl.obolibrary.org/obo/NCBITaxon_9606 for Homo sapiens)
+ doc: Host species as defined in NCBITaxon, e.g. http://purl.obolibrary.org/obo/NCBITaxon_9606 for Homo sapiens
type: string
jsonldPredicate:
_id: http://www.ebi.ac.uk/efo/EFO_0000532
@@ -45,7 +45,7 @@ $graph:
type: string?
jsonldPredicate: http://purl.obolibrary.org/obo/NCIT_C25688
host_treatment:
- doc: Process in which the act is intended to modify or alter
+ doc: Process in which the act is intended to modify or alter host status
type: string?
jsonldPredicate:
_id: http://www.ebi.ac.uk/efo/EFO_0000727
@@ -74,12 +74,12 @@ $graph:
jsonldPredicate:
_id: http://semanticscience.org/resource/SIO_001167
specimen_source:
- doc: A specimen that derives from an anatomical part or substance arising from an organism, e.g. tissue, organ
+ doc: Method how the specimen was derived as NCIT IRI, e.g. http://purl.obolibrary.org/obo/NCIT_C155831 (=nasopharyngeal swab)
type: string?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/OBI_0001479
specimen_source2:
- doc: A specimen that derives from an anatomical part or substance arising from an organism, e.g. tissue, organ
+ doc: Method how the specimen was derived as NCIT IRI, e.g. http://purl.obolibrary.org/obo/NCIT_C155835 (=throat swabb)
type: string?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/OBI_0001479
@@ -89,7 +89,7 @@ $graph:
jsonldPredicate:
_id: http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25164
collection_location:
- doc: Geographical location where the sample was collected as Gazetteer (https://www.ebi.ac.uk/ols/ontologies/gaz) reference, e.g. http://purl.obolibrary.org/obo/GAZ_00002845 (China)
+ doc: Geographical location where the sample was collected as wikidata reference, e.g. http://www.wikidata.org/entity/Q148 (China)
type: string?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/GAZ_00000448