aboutsummaryrefslogtreecommitdiff
path: root/bh20sequploader
diff options
context:
space:
mode:
authorAndreaGuarracino2020-08-28 10:37:28 +0200
committerAndreaGuarracino2020-08-28 10:37:28 +0200
commit22f997f59da74c842b6be2a8f4f53e5aa116472e (patch)
treec2422941725b7d899443a5d93f7155ea5320577b /bh20sequploader
parent4299c750728bbad4bdbf0311ff2a4b9c65d9883c (diff)
downloadbh20-seq-resource-22f997f59da74c842b6be2a8f4f53e5aa116472e.tar.gz
bh20-seq-resource-22f997f59da74c842b6be2a8f4f53e5aa116472e.tar.lz
bh20-seq-resource-22f997f59da74c842b6be2a8f4f53e5aa116472e.zip
fixed local QC, modifying the regex for FASTA/FASTQ to be more general
Diffstat (limited to 'bh20sequploader')
-rw-r--r--bh20sequploader/validation/formats4
-rw-r--r--bh20sequploader/validation/formats.mgcbin1032 -> 1021 bytes
2 files changed, 2 insertions, 2 deletions
diff --git a/bh20sequploader/validation/formats b/bh20sequploader/validation/formats
index ac804cf..0f61dc4 100644
--- a/bh20sequploader/validation/formats
+++ b/bh20sequploader/validation/formats
@@ -1,4 +1,4 @@
-0 regex \^\>.+\r?\n([acgtnACGTN]+\r?\n)*[acgtnACGTN]+(\r?\n)?$ FASTA
+0 regex \^\>.+\r?\n([A-Za-z]+\r?\n)*[A-Za-z]+(\r?\n)?$ FASTA
!:mime text/fasta
-0 regex \^@.+\r?\n[acgtnACGTN]*\n\\+.*\n[!-i]*(\r\n)? FASTQ
+0 regex \^@.+\r?\n[A-Za-z]*\n\\+.*\n[!-i]*(\r\n)? FASTQ
!:mime text/fastq \ No newline at end of file
diff --git a/bh20sequploader/validation/formats.mgc b/bh20sequploader/validation/formats.mgc
index bff282a..ee9748c 100644
--- a/bh20sequploader/validation/formats.mgc
+++ b/bh20sequploader/validation/formats.mgc
Binary files differ