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| author | AndreaGuarracino | 2020-08-28 11:20:22 +0200 |
|---|---|---|
| committer | AndreaGuarracino | 2020-08-28 11:20:22 +0200 |
| commit | 8f1819dc9b7ace9727d396d6b89f79b3b41165f8 (patch) | |
| tree | 1e5d425c0502209f59785ddb131f18452d96a29f /bh20sequploader | |
| parent | 3165a31e321cbf4641f9afdcbea511ee66f673bb (diff) | |
| download | bh20-seq-resource-8f1819dc9b7ace9727d396d6b89f79b3b41165f8.tar.gz bh20-seq-resource-8f1819dc9b7ace9727d396d6b89f79b3b41165f8.tar.lz bh20-seq-resource-8f1819dc9b7ace9727d396d6b89f79b3b41165f8.zip | |
local QC is optional
Diffstat (limited to 'bh20sequploader')
| -rw-r--r-- | bh20sequploader/main.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/bh20sequploader/main.py b/bh20sequploader/main.py index d2a6c5f..314a2ea 100644 --- a/bh20sequploader/main.py +++ b/bh20sequploader/main.py @@ -50,7 +50,7 @@ def qc_stuff(metadata, sequence_p1, sequence_p2, do_qc=True): target[0] = ("reads_1."+target[0][0][6:], target[0][1]) target[1] = ("reads_2."+target[1][0][6:], target[0][1]) - if target[0][2] == 'text/fasta' and sample_id != target[0][1]: + if do_qc and target[0][2] == 'text/fasta' and sample_id != target[0][1]: raise ValueError("The sample_id field in the metadata must be the same as the FASTA header") except Exception as e: |