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authorlltommy2020-04-14 22:56:33 +0200
committerlltommy2020-04-14 22:56:33 +0200
commitb106dc843cdc60902b0c6d423291584086fd2868 (patch)
tree59b0f263f5f8bc6201ed3e309c98a88d11d348dd /bh20sequploader/validation_shape.rdf
parent7ff1350f0509f85ebe40ff6e56861546045e83d3 (diff)
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Updated yaml schema and examples - plus ShEX shape to go along with it. Still work in progress but getting better and better I guess
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+PREFIX : <http://whatever/>
+PREFIX MainSchema: <http://biohackathon.org/bh20-seq-schema#MainSchema/>
+PREFIX hostSchema: <http://biohackathon.org/bh20-seq-schema#hostSchema/>
+PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
+PREFIX obo: <http://purl.obolibrary.org/obo/>
+PREFIX sio: <http://semanticscience.org/resource/>
+PREFIX efo: <http://www.ebi.ac.uk/efo/>
+PREFIX evs: <http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#>
+PREFIX edam: <http://edamontology.org/>
+
+:submissionShape {
+ MainSchema:host @:hostShape ;
+ MainSchema:sample @:sampleShape ;
+ MainSchema:submitter @:submitterShape ;
+ MainSchema:technology @:technologyShape ;
+ MainSchema:virus @:virusShape;
+}
+
+:hostShape {
+ efo:EFO_0000532 [ obo:NCBITaxon_~ ] ;
+ obo:PATO_0000047 [ obo:NCIT_C20197 obo:NCIT_C27993 obo:NCIT_C17998 ] ;
+ sio:SIO_000115 xsd:string ;
+ obo:PATO_0000011 xsd:integer ?;
+ obo:NCIT_C42574 [ obo:UO_~ ] ?;
+ sio:SIO_001167 xsd:string ?;
+ efo:EFO_0000727 xsd:string ?;
+}
+
+:sampleShape {
+ obo:OBI_0001895 xsd:string ;
+ sio:SIO_000115 xsd:string ;
+ sio:SIO_001167 xsd:string ;
+ evs:C25164 xsd:string ?;
+ obo:GAZ_00000448 [obo:GAZ_~] ?;
+ obo:OBI_0001472 xsd:string ?;
+ obo:OBI_0001479 xsd:string ?;
+}
+
+:submitterShape {
+ sio:SIO_000116 xsd:string ;
+ obo:NCIT_C37984 xsd:string ;
+ obo:NCIT_C37900 xsd:string ?;
+ obo:NCIT_C42781 xsd:string ?;
+ obo:OBI_0600047 xsd:string ?;
+ sio:SIO_000115 /https:\u002F\u002Forcid.org\u002F[0-9]{4}-[0-9]{4}-[0-9]{4}-[0-9]{4}/?;
+ sio:SIO_000172 xsd:string ?;
+ efo:EFO_0001741 xsd:string ?;
+}
+
+:technologyShape {
+ obo:OBI_0600047 xsd:string ;
+ obo:FLU_0000848 xsd:integer ?;
+ efo:EFO_0002699 xsd:string ?;
+}
+
+:virusShape{
+ edam:data_1875 [ obo:NCBITaxon_~ ] ;
+ sio:SIO_010055 xsd:string ?;
+} \ No newline at end of file