From b106dc843cdc60902b0c6d423291584086fd2868 Mon Sep 17 00:00:00 2001
From: lltommy
Date: Tue, 14 Apr 2020 22:56:33 +0200
Subject: Updated yaml schema and examples - plus ShEX shape to go along with
it. Still work in progress but getting better and better I guess
---
bh20sequploader/validation_shape.rdf | 59 ++++++++++++++++++++++++++++++++++++
1 file changed, 59 insertions(+)
create mode 100644 bh20sequploader/validation_shape.rdf
(limited to 'bh20sequploader/validation_shape.rdf')
diff --git a/bh20sequploader/validation_shape.rdf b/bh20sequploader/validation_shape.rdf
new file mode 100644
index 0000000..1d1e7d2
--- /dev/null
+++ b/bh20sequploader/validation_shape.rdf
@@ -0,0 +1,59 @@
+PREFIX :
+PREFIX MainSchema:
+PREFIX hostSchema:
+PREFIX xsd:
+PREFIX obo:
+PREFIX sio:
+PREFIX efo:
+PREFIX evs:
+PREFIX edam:
+
+:submissionShape {
+ MainSchema:host @:hostShape ;
+ MainSchema:sample @:sampleShape ;
+ MainSchema:submitter @:submitterShape ;
+ MainSchema:technology @:technologyShape ;
+ MainSchema:virus @:virusShape;
+}
+
+:hostShape {
+ efo:EFO_0000532 [ obo:NCBITaxon_~ ] ;
+ obo:PATO_0000047 [ obo:NCIT_C20197 obo:NCIT_C27993 obo:NCIT_C17998 ] ;
+ sio:SIO_000115 xsd:string ;
+ obo:PATO_0000011 xsd:integer ?;
+ obo:NCIT_C42574 [ obo:UO_~ ] ?;
+ sio:SIO_001167 xsd:string ?;
+ efo:EFO_0000727 xsd:string ?;
+}
+
+:sampleShape {
+ obo:OBI_0001895 xsd:string ;
+ sio:SIO_000115 xsd:string ;
+ sio:SIO_001167 xsd:string ;
+ evs:C25164 xsd:string ?;
+ obo:GAZ_00000448 [obo:GAZ_~] ?;
+ obo:OBI_0001472 xsd:string ?;
+ obo:OBI_0001479 xsd:string ?;
+}
+
+:submitterShape {
+ sio:SIO_000116 xsd:string ;
+ obo:NCIT_C37984 xsd:string ;
+ obo:NCIT_C37900 xsd:string ?;
+ obo:NCIT_C42781 xsd:string ?;
+ obo:OBI_0600047 xsd:string ?;
+ sio:SIO_000115 /https:\u002F\u002Forcid.org\u002F[0-9]{4}-[0-9]{4}-[0-9]{4}-[0-9]{4}/?;
+ sio:SIO_000172 xsd:string ?;
+ efo:EFO_0001741 xsd:string ?;
+}
+
+:technologyShape {
+ obo:OBI_0600047 xsd:string ;
+ obo:FLU_0000848 xsd:integer ?;
+ efo:EFO_0002699 xsd:string ?;
+}
+
+:virusShape{
+ edam:data_1875 [ obo:NCBITaxon_~ ] ;
+ sio:SIO_010055 xsd:string ?;
+}
\ No newline at end of file
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