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| author | AndreaGuarracino | 2020-08-28 10:47:48 +0200 |
|---|---|---|
| committer | AndreaGuarracino | 2020-08-28 10:47:48 +0200 |
| commit | cc8f99d50236b7d0c365990398785ecc319323ea (patch) | |
| tree | 6c4c5c98f3ff97038382dc77879737d64fc63495 /bh20sequploader/main.py | |
| parent | 22f997f59da74c842b6be2a8f4f53e5aa116472e (diff) | |
| download | bh20-seq-resource-cc8f99d50236b7d0c365990398785ecc319323ea.tar.gz bh20-seq-resource-cc8f99d50236b7d0c365990398785ecc319323ea.tar.lz bh20-seq-resource-cc8f99d50236b7d0c365990398785ecc319323ea.zip | |
qc_fasta returns also the seq_type; verified that only one FASTA is sent at a time; code cleaning
Diffstat (limited to 'bh20sequploader/main.py')
| -rw-r--r-- | bh20sequploader/main.py | 3 |
1 files changed, 3 insertions, 0 deletions
diff --git a/bh20sequploader/main.py b/bh20sequploader/main.py index d5de63e..80c33c8 100644 --- a/bh20sequploader/main.py +++ b/bh20sequploader/main.py @@ -40,7 +40,10 @@ def qc_stuff(metadata, sequence_p1, sequence_p2, do_qc=True): log.debug("FASTA/FASTQ QC" if do_qc else "Limited FASTA/FASTQ QC") target.append(qc_fasta(sequence_p1, check_with_mimimap2=do_qc)) if sequence_p2: + if target[0][2] == 'text/fasta': + raise ValueError("It is possible to upload just one FASTA file at a time") target.append(qc_fasta(sequence_p2)) + target[0] = ("reads_1."+target[0][0][6:], target[0][1]) target[1] = ("reads_2."+target[1][0][6:], target[0][1]) except Exception as e: |