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| author | Peter Amstutz | 2020-04-21 12:53:19 -0400 |
|---|---|---|
| committer | Peter Amstutz | 2020-04-21 12:53:19 -0400 |
| commit | 88d81f853cf04b7f28681dd9cdee775b0422f252 (patch) | |
| tree | b23f5dedc100c8508784d20edaba864f91e7444d /bh20sequploader/main.py | |
| parent | 85b85b676d7ecc218d9f84357b2e7ea0133eed94 (diff) | |
| download | bh20-seq-resource-88d81f853cf04b7f28681dd9cdee775b0422f252.tar.gz bh20-seq-resource-88d81f853cf04b7f28681dd9cdee775b0422f252.tar.lz bh20-seq-resource-88d81f853cf04b7f28681dd9cdee775b0422f252.zip | |
Working on NCBI import
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Diffstat (limited to 'bh20sequploader/main.py')
| -rw-r--r-- | bh20sequploader/main.py | 7 |
1 files changed, 4 insertions, 3 deletions
diff --git a/bh20sequploader/main.py b/bh20sequploader/main.py index 49d012d..2fda347 100644 --- a/bh20sequploader/main.py +++ b/bh20sequploader/main.py @@ -44,7 +44,8 @@ def main(): with col.open(target, "w") as f: r = args.sequence.read(65536) - print(r[0:20]) + seqlabel = r[1:r.index("\n")] + print(seqlabel) while r: f.write(r) r = args.sequence.read(65536) @@ -67,8 +68,8 @@ def main(): "upload_user": "%s@%s" % (getpass.getuser(), socket.gethostname()) } - col.save_new(owner_uuid=UPLOAD_PROJECT, name="Uploaded by %s from %s" % - (properties['upload_user'], properties['upload_ip']), + col.save_new(owner_uuid=UPLOAD_PROJECT, name="%s uploaded by %s from %s" % + (seqlabel, properties['upload_user'], properties['upload_ip']), properties=properties, ensure_unique_name=True) print("Done") |