From 88d81f853cf04b7f28681dd9cdee775b0422f252 Mon Sep 17 00:00:00 2001 From: Peter Amstutz Date: Tue, 21 Apr 2020 12:53:19 -0400 Subject: Working on NCBI import Arvados-DCO-1.1-Signed-off-by: Peter Amstutz --- bh20sequploader/main.py | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) (limited to 'bh20sequploader/main.py') diff --git a/bh20sequploader/main.py b/bh20sequploader/main.py index 49d012d..2fda347 100644 --- a/bh20sequploader/main.py +++ b/bh20sequploader/main.py @@ -44,7 +44,8 @@ def main(): with col.open(target, "w") as f: r = args.sequence.read(65536) - print(r[0:20]) + seqlabel = r[1:r.index("\n")] + print(seqlabel) while r: f.write(r) r = args.sequence.read(65536) @@ -67,8 +68,8 @@ def main(): "upload_user": "%s@%s" % (getpass.getuser(), socket.gethostname()) } - col.save_new(owner_uuid=UPLOAD_PROJECT, name="Uploaded by %s from %s" % - (properties['upload_user'], properties['upload_ip']), + col.save_new(owner_uuid=UPLOAD_PROJECT, name="%s uploaded by %s from %s" % + (seqlabel, properties['upload_user'], properties['upload_ip']), properties=properties, ensure_unique_name=True) print("Done") -- cgit v1.2.3