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authorPeter Amstutz2020-11-09 16:55:33 -0500
committerPeter Amstutz2020-11-09 16:55:33 -0500
commitb5143c79de268b844f3a6a63d92c6389b047f35e (patch)
treea840b28cdb10bc59adebca6cd0222ce0b717f48e /bh20seqanalyzer/main.py
parent0d1831449d7541e0ec36fd75793915d144a02b5d (diff)
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Make it so "pangenome analysis" only runs collect-seqs.
Will ensure that metadata is kept up to date. GFA isn't being generated. Will introduce new workflow that uses from_sparql to analyze a subset. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Diffstat (limited to 'bh20seqanalyzer/main.py')
-rw-r--r--bh20seqanalyzer/main.py2
1 files changed, 1 insertions, 1 deletions
diff --git a/bh20seqanalyzer/main.py b/bh20seqanalyzer/main.py
index 5f00080..0906958 100644
--- a/bh20seqanalyzer/main.py
+++ b/bh20seqanalyzer/main.py
@@ -215,7 +215,7 @@ class SeqAnalyzer:
most_recent_analysis = self.api.groups().list(filters=[['owner_uuid', '=', self.pangenome_analysis_project]],
order="created_at desc").execute()
for m in most_recent_analysis["items"]:
- wf = self.get_workflow_output_from_project(m["uuid"], "arv-main.cwl")
+ wf = self.get_workflow_output_from_project(m["uuid"], "collect-seqs.cwl")
if wf is None:
continue
src = self.api.collections().get(uuid=wf["output_uuid"]).execute()