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| author | Peter Amstutz | 2020-11-09 16:55:33 -0500 |
|---|---|---|
| committer | Peter Amstutz | 2020-11-09 16:55:33 -0500 |
| commit | b5143c79de268b844f3a6a63d92c6389b047f35e (patch) | |
| tree | a840b28cdb10bc59adebca6cd0222ce0b717f48e /bh20seqanalyzer | |
| parent | 0d1831449d7541e0ec36fd75793915d144a02b5d (diff) | |
| download | bh20-seq-resource-b5143c79de268b844f3a6a63d92c6389b047f35e.tar.gz bh20-seq-resource-b5143c79de268b844f3a6a63d92c6389b047f35e.tar.lz bh20-seq-resource-b5143c79de268b844f3a6a63d92c6389b047f35e.zip | |
Make it so "pangenome analysis" only runs collect-seqs.
Will ensure that metadata is kept up to date.
GFA isn't being generated. Will introduce new workflow that uses
from_sparql to analyze a subset.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Diffstat (limited to 'bh20seqanalyzer')
| -rw-r--r-- | bh20seqanalyzer/main.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/bh20seqanalyzer/main.py b/bh20seqanalyzer/main.py index 5f00080..0906958 100644 --- a/bh20seqanalyzer/main.py +++ b/bh20seqanalyzer/main.py @@ -215,7 +215,7 @@ class SeqAnalyzer: most_recent_analysis = self.api.groups().list(filters=[['owner_uuid', '=', self.pangenome_analysis_project]], order="created_at desc").execute() for m in most_recent_analysis["items"]: - wf = self.get_workflow_output_from_project(m["uuid"], "arv-main.cwl") + wf = self.get_workflow_output_from_project(m["uuid"], "collect-seqs.cwl") if wf is None: continue src = self.api.collections().get(uuid=wf["output_uuid"]).execute() |