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authorPeter Amstutz2020-04-10 16:11:29 -0400
committerPeter Amstutz2020-04-10 16:12:00 -0400
commit1b1283131f3c684bfff2c1b165565957ac01b4be (patch)
tree34afd601783b90fa62ae7f7ca369555bd8b8cbab /bh20seqanalyzer/main.py
parent1f66b8270a7bf06f98e2a336385bc84b778ead66 (diff)
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Fix swapped fasta/fastq
Replace example sequence with COV19 reference instead of HIV. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Diffstat (limited to 'bh20seqanalyzer/main.py')
-rw-r--r--bh20seqanalyzer/main.py1
1 files changed, 1 insertions, 0 deletions
diff --git a/bh20seqanalyzer/main.py b/bh20seqanalyzer/main.py
index c05b402..7626662 100644
--- a/bh20seqanalyzer/main.py
+++ b/bh20seqanalyzer/main.py
@@ -47,6 +47,7 @@ def validate_upload(api, collection, validated_project,
valid = False
else:
if "reads.fastq" in col:
+ logging.info("Upload '%s' running fastq2fasta", collection["name"])
start_fastq_to_fasta(api, collection, fastq_project, fastq_workflow_uuid)
return False
else: