From 1b1283131f3c684bfff2c1b165565957ac01b4be Mon Sep 17 00:00:00 2001
From: Peter Amstutz
Date: Fri, 10 Apr 2020 16:11:29 -0400
Subject: Fix swapped fasta/fastq

Replace example sequence with COV19 reference instead of HIV.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
---
 bh20seqanalyzer/main.py | 1 +
 1 file changed, 1 insertion(+)

(limited to 'bh20seqanalyzer/main.py')

diff --git a/bh20seqanalyzer/main.py b/bh20seqanalyzer/main.py
index c05b402..7626662 100644
--- a/bh20seqanalyzer/main.py
+++ b/bh20seqanalyzer/main.py
@@ -47,6 +47,7 @@ def validate_upload(api, collection, validated_project,
                 valid = False
         else:
             if "reads.fastq" in col:
+                logging.info("Upload '%s' running fastq2fasta", collection["name"])
                 start_fastq_to_fasta(api, collection, fastq_project, fastq_workflow_uuid)
                 return False
             else:
-- 
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