diff options
| author | Peter Amstutz | 2020-04-10 16:11:29 -0400 |
|---|---|---|
| committer | Peter Amstutz | 2020-04-10 16:12:00 -0400 |
| commit | 1b1283131f3c684bfff2c1b165565957ac01b4be (patch) | |
| tree | 34afd601783b90fa62ae7f7ca369555bd8b8cbab /bh20seqanalyzer/main.py | |
| parent | 1f66b8270a7bf06f98e2a336385bc84b778ead66 (diff) | |
| download | bh20-seq-resource-1b1283131f3c684bfff2c1b165565957ac01b4be.tar.gz bh20-seq-resource-1b1283131f3c684bfff2c1b165565957ac01b4be.tar.lz bh20-seq-resource-1b1283131f3c684bfff2c1b165565957ac01b4be.zip | |
Fix swapped fasta/fastq
Replace example sequence with COV19 reference instead of HIV.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Diffstat (limited to 'bh20seqanalyzer/main.py')
| -rw-r--r-- | bh20seqanalyzer/main.py | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/bh20seqanalyzer/main.py b/bh20seqanalyzer/main.py index c05b402..7626662 100644 --- a/bh20seqanalyzer/main.py +++ b/bh20seqanalyzer/main.py @@ -47,6 +47,7 @@ def validate_upload(api, collection, validated_project, valid = False else: if "reads.fastq" in col: + logging.info("Upload '%s' running fastq2fasta", collection["name"]) start_fastq_to_fasta(api, collection, fastq_project, fastq_workflow_uuid) return False else: |