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| author | Peter Amstutz | 2020-11-10 17:26:56 -0500 |
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| committer | Peter Amstutz | 2020-11-10 17:27:43 -0500 |
| commit | c872248e43c1c66e5fed8ef341f7b4ac21d63e6f (patch) | |
| tree | 5708ef42d318d2ce0b2609b856631826a08c834c /README.md | |
| parent | 992c52f490024ffa34ac6c37c2e9434d34349340 (diff) | |
| download | bh20-seq-resource-c872248e43c1c66e5fed8ef341f7b4ac21d63e6f.tar.gz bh20-seq-resource-c872248e43c1c66e5fed8ef341f7b4ac21d63e6f.tar.lz bh20-seq-resource-c872248e43c1c66e5fed8ef341f7b4ac21d63e6f.zip | |
Valid uploads with sequence_label in PubSeq replaces old one.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Diffstat (limited to 'README.md')
| -rw-r--r-- | README.md | 4 |
1 files changed, 3 insertions, 1 deletions
@@ -146,9 +146,11 @@ For running/developing the uploader with GNU Guix see [INSTALL.md](./doc/INSTALL Run the uploader with a FASTA or FASTQ file and accompanying metadata file in JSON or YAML: ```sh -bh20-seq-uploader example/sequence.fasta example/metadata.yaml +bh20-seq-uploader example/metadata.yaml example/sequence.fasta ``` +If the sample_id of your upload matches a sample already in PubSeq, it will be considered a new version and supercede the existing entry. + ## Workflow for Generating a Pangenome All these uploaded sequences are being fed into a workflow to generate a [pangenome](https://academic.oup.com/bib/article/19/1/118/2566735) for the virus. You can replicate this workflow yourself. |