From c872248e43c1c66e5fed8ef341f7b4ac21d63e6f Mon Sep 17 00:00:00 2001 From: Peter Amstutz Date: Tue, 10 Nov 2020 17:26:56 -0500 Subject: Valid uploads with sequence_label in PubSeq replaces old one. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz --- README.md | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) (limited to 'README.md') diff --git a/README.md b/README.md index 3815bf4..9007350 100644 --- a/README.md +++ b/README.md @@ -146,9 +146,11 @@ For running/developing the uploader with GNU Guix see [INSTALL.md](./doc/INSTALL Run the uploader with a FASTA or FASTQ file and accompanying metadata file in JSON or YAML: ```sh -bh20-seq-uploader example/sequence.fasta example/metadata.yaml +bh20-seq-uploader example/metadata.yaml example/sequence.fasta ``` +If the sample_id of your upload matches a sample already in PubSeq, it will be considered a new version and supercede the existing entry. + ## Workflow for Generating a Pangenome All these uploaded sequences are being fed into a workflow to generate a [pangenome](https://academic.oup.com/bib/article/19/1/118/2566735) for the virus. You can replicate this workflow yourself. -- cgit v1.2.3