aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorPeter Amstutz2020-04-30 11:53:15 -0400
committerPeter Amstutz2020-04-30 12:01:37 -0400
commite3d45f22bf1943bcba5b09a7e78254ebaacf9f95 (patch)
tree53c41d60016b3628e6cc8b7c4660635ffc9f62ad
parent5c05facbdb1e35556256cd11d6a814822ebb6159 (diff)
downloadbh20-seq-resource-e3d45f22bf1943bcba5b09a7e78254ebaacf9f95.tar.gz
bh20-seq-resource-e3d45f22bf1943bcba5b09a7e78254ebaacf9f95.tar.lz
bh20-seq-resource-e3d45f22bf1943bcba5b09a7e78254ebaacf9f95.zip
Handle running in a container with no username
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
-rw-r--r--bh20sequploader/main.py7
1 files changed, 6 insertions, 1 deletions
diff --git a/bh20sequploader/main.py b/bh20sequploader/main.py
index 4c4711d..10d1029 100644
--- a/bh20sequploader/main.py
+++ b/bh20sequploader/main.py
@@ -62,11 +62,16 @@ def main():
external_ip = urllib.request.urlopen('https://ident.me').read().decode('utf8')
+ try:
+ username = getpass.getuser()
+ except KeyError:
+ username = "unknown"
+
properties = {
"sequence_label": seqlabel,
"upload_app": "bh20-seq-uploader",
"upload_ip": external_ip,
- "upload_user": "%s@%s" % (getpass.getuser(), socket.gethostname())
+ "upload_user": "%s@%s" % (username, socket.gethostname())
}
col.save_new(owner_uuid=UPLOAD_PROJECT, name="%s uploaded by %s from %s" %