diff options
| author | Peter Amstutz | 2020-04-20 17:25:37 -0400 |
|---|---|---|
| committer | Peter Amstutz | 2020-04-20 17:25:37 -0400 |
| commit | cc557a64bb489bb39c3abf932a6cdfb87ad4a383 (patch) | |
| tree | e219cc6df02b4d3c58fc44eab02f4f66c83a801a | |
| parent | 5f44da5804547088d0f39d0687d81598598eebe5 (diff) | |
| download | bh20-seq-resource-cc557a64bb489bb39c3abf932a6cdfb87ad4a383.tar.gz bh20-seq-resource-cc557a64bb489bb39c3abf932a6cdfb87ad4a383.tar.lz bh20-seq-resource-cc557a64bb489bb39c3abf932a6cdfb87ad4a383.zip | |
Make sure there is a newline in relabeled fasta (but no blank lines)
| -rw-r--r-- | workflows/pangenome-generate/relabel-seqs.py | 3 |
1 files changed, 3 insertions, 0 deletions
diff --git a/workflows/pangenome-generate/relabel-seqs.py b/workflows/pangenome-generate/relabel-seqs.py index b558fe2..1188ceb 100644 --- a/workflows/pangenome-generate/relabel-seqs.py +++ b/workflows/pangenome-generate/relabel-seqs.py @@ -12,4 +12,7 @@ for i, r in enumerate(reads): data = fa.read(8096) while data: relabeled_fasta.write(data) + endswithnewline = data.endswith("\\n") data = fa.read(8096) + if not endswithnewline: + relabeled_fasta.write("\\n") |