aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorPeter Amstutz2020-05-14 21:30:19 -0400
committerPeter Amstutz2020-05-14 21:30:19 -0400
commit79a85f846671d575eae6f83d96659c0e1be06011 (patch)
tree3a5ae32a96eae3cd129ab3b350043ab0a4e6761f
parent9f901a09a6f5ac95d6875c9e0b435ea9b62fc0f9 (diff)
downloadbh20-seq-resource-79a85f846671d575eae6f83d96659c0e1be06011.tar.gz
bh20-seq-resource-79a85f846671d575eae6f83d96659c0e1be06011.tar.lz
bh20-seq-resource-79a85f846671d575eae6f83d96659c0e1be06011.zip
Switch fasta identifiers to use a real working URL
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
-rw-r--r--bh20seqanalyzer/main.py2
1 files changed, 1 insertions, 1 deletions
diff --git a/bh20seqanalyzer/main.py b/bh20seqanalyzer/main.py
index 07e5f69..28b5e31 100644
--- a/bh20seqanalyzer/main.py
+++ b/bh20seqanalyzer/main.py
@@ -146,7 +146,7 @@ def start_pangenome_analysis(api,
"class": "File",
"location": "keep:%s/metadata.yaml" % v["portable_data_hash"]
})
- inputobj["subjects"].append("http://arvados.org/keep:%s/sequence.fasta" % v["portable_data_hash"])
+ inputobj["subjects"].append("http://collections.lugli.arvadosapi.com/c=%s/sequence.fasta" % v["portable_data_hash"])
run_workflow(api, analysis_project, pangenome_workflow_uuid, "Pangenome analysis", inputobj)