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authorPjotr Prins2020-04-12 16:14:54 -0500
committerPjotr Prins2020-04-12 16:14:54 -0500
commit1f7e1d239fdb3a30ccf3e6cfa9a71a92d93b7e13 (patch)
tree43e0636c812c32108572d4789c010c3c9d317b9f
parent2e4d12e9890c36421d60ab06f6131f029844bc77 (diff)
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Web page
-rw-r--r--bh20simplewebuploader/templates/form.html42
1 files changed, 34 insertions, 8 deletions
diff --git a/bh20simplewebuploader/templates/form.html b/bh20simplewebuploader/templates/form.html
index 839f22f..af8c856 100644
--- a/bh20simplewebuploader/templates/form.html
+++ b/bh20simplewebuploader/templates/form.html
@@ -130,6 +130,9 @@
<section class="header">
<div class="logo"><a href="https://github.com/tylermorganwall/coronaobj/"><img src="static/image/coronasmallcomp.gif" width="150" /></a></div>
<h1>Web Uploader for Public SARS-CoV-2 Sequence Resource</h1>
+
+<small>Disabled until we got everything wired up</small>
+
</section>
<hr>
@@ -152,25 +155,28 @@
</p>
<div class="fasta-file-select">
- <label for="fasta">Select FASTA file of assembled genome (max 40K), or FASTQ of reads (max 50MB):</label>
+ <label for="fasta">Select FASTA file of assembled genome (max 50K), or FASTQ of reads (max 500MB):</label>
<br>
<input type="file" id="fasta" name="fasta" accept=".fa,.fasta,.fna,.fq" required>
<br>
+ <small>
+ Note that by uploading your data you automatically agree to a <a hef="https://creativecommons.org/licenses/by/4.0/">CC-BY-4.0 license</a>. </small>
</div>
<div class="metadata">
<label>Select metadata submission method:</label>
<br>
- <input type="radio" id="metadata_upload" name="metadata_type" value="upload" onchange="setMode()" checked required>
- <label for="metadata_upload">Upload metadata file</label>
- <input type="radio" id="metadata_form" name="metadata_type" value="fill" onchange="setMode()" required>
+ <input type="radio" id="metadata_form" name="metadata_type" value="fill" onchange="setMode()" checked required>
<label for="metadata_form">Fill in metadata manually</label>
+ <input type="radio" id="metadata_upload" name="metadata_type" value="upload" onchange="setMode()" required>
+ <label for="metadata_upload">Upload metadata file</label>
<br>
+ <small>Make sure the metadata has submitter attribution details.</small>
</div>
<div id="metadata_upload_form_spot">
<div id="metadata_upload_form">
- <label for="metadata">Select JSON or YAML metadata file following <a href="https://github.com/arvados/bh20-seq-resource/blob/master/bh20sequploader/bh20seq-schema.yml" target="_blank">this schema</a> (<a href="https://github.com/arvados/bh20-seq-resource/blob/master/example/metadata.yaml" target="_blank">Example 1</a>, <a href="https://github.com/arvados/bh20-seq-resource/blob/master/example/minimal_example.yaml" target="_blank">Example 2</a>, max 1MB):</label>
+ <label for="metadata">Select JSON or YAML metadata file following <a href="https://github.com/arvados/bh20-seq-resource/blob/master/bh20sequploader/bh20seq-schema.yml" target="_blank">this schema</a> and <a href="https://github.com/arvados/bh20-seq-resource/blob/master/example/metadata.yaml" target="_blank">example</a> (max 50K):</label>
<br>
<input type="file" id="metadata" name="metadata" accept=".json,.yml,.yaml" required>
<br>
@@ -206,11 +212,31 @@
</div>
- <input class="submit" type="submit" value="Add to Pangenome">
+<input class="submit" type="submit" value="Add to Pangenome" disabled>
</form>
</section>
- <hr>
- <small><a href="https://github.com/arvados/bh20-seq-resource">Source</a> &middot; Made for <a href="https://github.com/virtual-biohackathons/covid-19-bh20">COVID-19-BH20</a></small>
+<hr>
+<br>
+<div class="intro">
+ <h3>ABOUT</h3>
+ <small>This a public repository created at the COVID-19 BioHackathon
+ that has a low barrier to entry for uploading sequence data using
+ best practices. I.e., data is published with a creative commons
+ 4.0 (CC-4.0) license with metadata using state-of-the art
+ standards and, perhaps most importantly, providing standardized
+ workflows that get triggered on upload, so that results are
+ immediately available in standardized data formats. The repository
+ will be maintained and expanded for the duration of the
+ pandemic. To contribute data simply upload it! To contribute code
+ and/or workflows see
+ the <a href="https://github.com/arvados/bh20-seq-resource">project
+ repository</a>. For more information see the <a href="https://github.com/arvados/bh20-seq-resource/blob/master/paper/paper.md">paper</a> (WIP).</small>
+</p>
+ <br>
+
+ <hr>
+ <small><a href="https://github.com/arvados/bh20-seq-resource">Source</a> &middot; Made for <a href="https://github.com/virtual-biohackathons/covid-19-bh20">COVID-19-BH20</a> | For more information E-mail pjotr.public444 at thebird.nl
+ </small>
<a href="https://github.com/virtual-biohackathons/covid-19-bh20">
<img src="static/image/covid19biohackathon.png" align="right" width="300"></a>