index
:
bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
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analysis-refactor
Add "validated" and "running workflows" tables to status
Peter Amstutz
4 years
fasta-subset-from-query
Extract PDH from result and construct URIs from that
Peter Amstutz
4 years
generate-cwl
Use default output of pipeline
Arun Isaac
4 years
master
Jetson test sequence
Pjotr Prins
4 years
new_assembly_method_field
added the assembly_method field to distinguish de-novo assemblies from refere...
AndreaGuarracino
4 years
pangenome_workflow_abpoa
abPOA works better starting from shorter sequences
AndreaGuarracino
4 years
upload-download-status
Give uploader an option to trust local validation (for batch imports)
Peter Amstutz
4 years
uuid-for-resource
Use arvados uuids for RDF subjects.
Peter Amstutz
4 years
yamlfa2ttl
sample_id in the FASTA has to match the sample_id in the YAML
AndreaGuarracino
4 years
Age
Commit message
Author
2020-07-16
Add "validated" and "running workflows" tables to status
analysis-refactor
Peter Amstutz
2020-07-16
Improve uploader reporting.
Peter Amstutz
2020-07-16
Cleanup script also clears errors for revalidate
Peter Amstutz
2020-07-16
Improve upload form layout.
Peter Amstutz
2020-07-16
Catch exceptions
Peter Amstutz
2020-07-16
Make license optional
Peter Amstutz
2020-07-16
Make license optional for now
Peter Amstutz
2020-07-16
Refactor analysis code into a class
Peter Amstutz
2020-07-16
Add edit link for download page
Pjotr Prins
2020-07-16
Add edit icon to text on github
Pjotr Prins
[...]