pyhegp - Homomorphic encryption of genotypes and phenotypes

Age	Commit message (Expand)	Author
4 days	Avoid wildcard import from helpers.strategies.	Arun Isaac
4 days	Limit values in genotype and phenotype strategies.	Arun Isaac
4 days	Test that ciphertext does not contain NA values.	Arun Isaac
4 days	Parameterize number of samples in phenotype frame strategy.	Arun Isaac
4 days	Parameterize number of samples in genotype frame strategy.	Arun Isaac
4 days	Parameterize presence of reference column in genotype frame strategy.	Arun Isaac
4 days	Add keys strategy.	Arun Isaac
5 days	Compare complete frame in test_cat_*.	Arun Isaac
5 days	Do not import unused settings from hypothesis.	Arun Isaac
5 days	Test cat_phenotype.	Arun Isaac
6 days	Rename cat subcommand to cat-genotype.	Arun Isaac
6 days	Add is_phenotype_metadata_column.	Arun Isaac
6 days	Drop duplicates in generated test phenotype frames.	Arun Isaac
6 days	Merge, not concat, genotype frames.	Arun Isaac
6 days	Test cat_genotype.	Arun Isaac
6 days	Add is_genotype_metadata_column.	Arun Isaac
6 days	Drop duplicates in generated test genotype frames.	Arun Isaac
6 days	Move hypothesis strategies to separate file.	Arun Isaac
6 days	Suffix CLI subcommand functions with _command.	Arun Isaac
7 days	Do not require output ciphertext file path.	Arun Isaac
7 days	Use open method of Path object, rather than the open function.	Arun Isaac
7 days	Test for existence of output files.	Arun Isaac
7 days	Add phenotype file format and serialization functions.	Arun Isaac
2025-08-06	Subset to common SNPs.	Arun Isaac
2025-08-06	Standardize key files.	Arun Isaac
2025-08-06	Compute summary on encryption if not provided.	Arun Isaac
2025-08-06	Add simple workflow.	Arun Isaac
2025-08-06	Test joint workflow CLI.	Arun Isaac
2025-08-06	Standardize file formats in the likeness of plink files.	Arun Isaac
2025-08-06	Move negate to pyhegp.utils.	Arun Isaac
2025-08-06	Loosen relative tolerance in test_pool_stats.	Arun Isaac
2025-08-01	Test that read_genotype and write_genotype are inverses.	Arun Isaac
2025-08-01	Test solution of linear system after encryption.	Arun Isaac
2025-08-01	Separate standardization from encryption.	Arun Isaac
2025-08-01	Do not test encryption on order 1 matrices.	Arun Isaac
2025-07-17	Standardize before encryption.	Arun Isaac
2025-07-17	Add standardization.	Arun Isaac
2025-07-17	Add pool subcommand.	Arun Isaac
2025-07-17	Implement the summary file format.	Arun Isaac
2025-07-17	Use default array shapes testing encryption/decryption.	Arun Isaac
2025-07-17	Reduce maximum matrix size testing encryption/decryption.	Arun Isaac
2025-07-17	Organize source into directory structure.	Arun Isaac