pyhegp - Homomorphic encryption of genotypes and phenotypes

Age	Commit message (Expand)	Author
33 hours	Catenate phenotype frames along the index.	Arun Isaac
33 hours	Split catenable phenotype frames along the index.	Arun Isaac
34 hours	Generalize split_data_frame to split along any axis.	Arun Isaac
34 hours	Simplify split_data_frame so it is more composable.	Arun Isaac
2 days	Generate unique SNPs in genotype frames without dropping duplicates.	Arun Isaac
2 days	Deduplicate genotype frame metadata generation.	Arun Isaac
2 days	Drop SNPs with a zero standard deviation.	Arun Isaac
3 days	Avoid wildcard import from helpers.strategies.	Arun Isaac
3 days	Limit values in genotype and phenotype strategies.	Arun Isaac
3 days	Test that ciphertext does not contain NA values.	Arun Isaac
3 days	Parameterize number of samples in phenotype frame strategy.	Arun Isaac
3 days	Parameterize number of samples in genotype frame strategy.	Arun Isaac
3 days	Parameterize presence of reference column in genotype frame strategy.	Arun Isaac
3 days	Add keys strategy.	Arun Isaac
4 days	Compare complete frame in test_cat_*.	Arun Isaac
4 days	Do not import unused settings from hypothesis.	Arun Isaac
4 days	Test cat_phenotype.	Arun Isaac
5 days	Rename cat subcommand to cat-genotype.	Arun Isaac
5 days	Add is_phenotype_metadata_column.	Arun Isaac
5 days	Drop duplicates in generated test phenotype frames.	Arun Isaac
5 days	Merge, not concat, genotype frames.	Arun Isaac
5 days	Test cat_genotype.	Arun Isaac
5 days	Add is_genotype_metadata_column.	Arun Isaac
5 days	Drop duplicates in generated test genotype frames.	Arun Isaac
5 days	Move hypothesis strategies to separate file.	Arun Isaac
5 days	Suffix CLI subcommand functions with _command.	Arun Isaac
6 days	Do not require output ciphertext file path.	Arun Isaac
6 days	Use open method of Path object, rather than the open function.	Arun Isaac
6 days	Test for existence of output files.	Arun Isaac
6 days	Add phenotype file format and serialization functions.	Arun Isaac
2025-08-06	Subset to common SNPs.	Arun Isaac
2025-08-06	Standardize key files.	Arun Isaac
2025-08-06	Compute summary on encryption if not provided.	Arun Isaac
2025-08-06	Add simple workflow.	Arun Isaac
2025-08-06	Test joint workflow CLI.	Arun Isaac
2025-08-06	Standardize file formats in the likeness of plink files.	Arun Isaac
2025-08-06	Move negate to pyhegp.utils.	Arun Isaac
2025-08-06	Loosen relative tolerance in test_pool_stats.	Arun Isaac
2025-08-01	Test that read_genotype and write_genotype are inverses.	Arun Isaac
2025-08-01	Test solution of linear system after encryption.	Arun Isaac
2025-08-01	Separate standardization from encryption.	Arun Isaac
2025-08-01	Do not test encryption on order 1 matrices.	Arun Isaac
2025-07-17	Standardize before encryption.	Arun Isaac
2025-07-17	Add standardization.	Arun Isaac
2025-07-17	Add pool subcommand.	Arun Isaac
2025-07-17	Implement the summary file format.	Arun Isaac
2025-07-17	Use default array shapes testing encryption/decryption.	Arun Isaac
2025-07-17	Reduce maximum matrix size testing encryption/decryption.	Arun Isaac
2025-07-17	Organize source into directory structure.	Arun Isaac