diff options
Diffstat (limited to 'tests')
| -rw-r--r-- | tests/helpers/strategies.py | 12 |
1 files changed, 9 insertions, 3 deletions
diff --git a/tests/helpers/strategies.py b/tests/helpers/strategies.py index ed9adde..7e51bc3 100644 --- a/tests/helpers/strategies.py +++ b/tests/helpers/strategies.py @@ -45,9 +45,8 @@ reference_column = column(name="reference", include_characters=("A", "G", "C", "T")), min_size=1)) -sample_names = st.lists(tabless_printable_ascii_text - .filter(negate(is_genotype_metadata_column)), - unique=True) +sample_names = (tabless_printable_ascii_text + .filter(negate(is_genotype_metadata_column))) @st.composite def summaries(draw): @@ -61,12 +60,19 @@ def summaries(draw): @st.composite def genotype_frames(draw, + number_of_samples=st.integers(min_value=0, + max_value=10), reference_present=st.booleans()): + _number_of_samples = draw(number_of_samples) genotype = draw(data_frames( columns=([chromosome_column, position_column] + ([reference_column] if draw(reference_present) else []) + + columns(draw(st.lists(sample_names, + min_size=_number_of_samples, + max_size=_number_of_samples, + unique=True)), dtype="float64", elements=st.floats(allow_nan=False))))) return genotype.drop_duplicates(subset=list( |