diff options
Diffstat (limited to 'tests')
| -rw-r--r-- | tests/test_pyhegp.py | 10 |
1 files changed, 5 insertions, 5 deletions
diff --git a/tests/test_pyhegp.py b/tests/test_pyhegp.py index 58304a4..373f39e 100644 --- a/tests/test_pyhegp.py +++ b/tests/test_pyhegp.py @@ -29,7 +29,7 @@ import pandas as pd import pytest from pytest import approx -from pyhegp.pyhegp import Stats, main, hegp_encrypt, hegp_decrypt, random_key, pool_stats, center, uncenter, standardize, unstandardize, genotype_summary, encrypt_genotype, encrypt_phenotype, cat_genotype, cat_phenotype +from pyhegp.pyhegp import Stats, main, hegp_encrypt, hegp_decrypt, random_key, pool_stats, center, uncenter, standardize, unstandardize, genotype_summary, drop_zero_stddev_snps, drop_uncommon_snps, encrypt_genotype, encrypt_phenotype, cat_genotype, cat_phenotype from pyhegp.serialization import Summary, read_summary, read_genotype, is_genotype_metadata_column, is_phenotype_metadata_column from pyhegp.utils import negate @@ -166,10 +166,10 @@ def test_conservation_of_solutions(genotype_phenotype_and_number_of_key_blocks): key="number-of-samples")), st.booleans()) def test_encrypt_genotype_does_not_produce_na(genotype, key, only_center): - assert not encrypt_genotype(genotype, - key, - genotype_summary(genotype), - only_center).isna().any(axis=None) + summary = drop_zero_stddev_snps(genotype_summary(genotype)) + common_genotype = drop_uncommon_snps(genotype, summary) + assert not (encrypt_genotype(common_genotype, key, summary, only_center) + .isna().any(axis=None)) @given(phenotype_frames(st.shared(st.integers(min_value=2, max_value=10), key="number-of-samples")), |