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| author | Arun Isaac | 2025-08-06 19:01:04 +0100 |
|---|---|---|
| committer | Arun Isaac | 2025-08-06 22:46:15 +0100 |
| commit | 6de3e6bf27d1abebb98d6f841af70cd617e81dd0 (patch) | |
| tree | 8039a5589a279257a0fc0735df31561f9c0d4c66 /test-data/pool-test-summary2 | |
| parent | bc046a25f1531386293a470e21b569f8411f2235 (diff) | |
| download | pyhegp-6de3e6bf27d1abebb98d6f841af70cd617e81dd0.tar.gz pyhegp-6de3e6bf27d1abebb98d6f841af70cd617e81dd0.tar.lz pyhegp-6de3e6bf27d1abebb98d6f841af70cd617e81dd0.zip | |
Subset to common SNPs.
* pyhegp/pyhegp.py: Import reduce from functools. (pool_summaries, encrypt_genotype): New functions. (pool): Use pool_summaries. (encrypt): Use encrypt_genotype. * tests/test_pyhegp.py: Import pandas; Summary, read_summary and read_genotype from pyhegp.serialization. (test_pool, test_encrypt): New tests. * test-data/encrypt-test-encrypted-genotype.tsv, test-data/encrypt-test-genotype.tsv, test-data/encrypt-test-key, test-data/encrypt-test-summary, test-data/pool-test-complete-summary, test-data/pool-test-summary1, test-data/pool-test-summary2: New files.
Diffstat (limited to 'test-data/pool-test-summary2')
| -rw-r--r-- | test-data/pool-test-summary2 | 7 |
1 files changed, 7 insertions, 0 deletions
diff --git a/test-data/pool-test-summary2 b/test-data/pool-test-summary2 new file mode 100644 index 0000000..11c02d1 --- /dev/null +++ b/test-data/pool-test-summary2 @@ -0,0 +1,7 @@ +# pyhegp summary file version 1 +# number-of-samples 5 +chromosome position reference mean standard-deviation +chr1 1 A 0 1 +chr2 19 G 2 3 +chrX 21 C 4 5 +chrX 21 T 4 5 |