From 6de3e6bf27d1abebb98d6f841af70cd617e81dd0 Mon Sep 17 00:00:00 2001
From: Arun Isaac
Date: Wed, 6 Aug 2025 19:01:04 +0100
Subject: Subset to common SNPs.

* pyhegp/pyhegp.py: Import reduce from functools.
(pool_summaries, encrypt_genotype): New functions.
(pool): Use pool_summaries.
(encrypt): Use encrypt_genotype.
* tests/test_pyhegp.py: Import pandas; Summary, read_summary and
read_genotype from pyhegp.serialization.
(test_pool, test_encrypt): New tests.
* test-data/encrypt-test-encrypted-genotype.tsv,
test-data/encrypt-test-genotype.tsv, test-data/encrypt-test-key,
test-data/encrypt-test-summary, test-data/pool-test-complete-summary,
test-data/pool-test-summary1, test-data/pool-test-summary2: New files.
---
 test-data/pool-test-summary2 | 7 +++++++
 1 file changed, 7 insertions(+)
 create mode 100644 test-data/pool-test-summary2

(limited to 'test-data/pool-test-summary2')

diff --git a/test-data/pool-test-summary2 b/test-data/pool-test-summary2
new file mode 100644
index 0000000..11c02d1
--- /dev/null
+++ b/test-data/pool-test-summary2
@@ -0,0 +1,7 @@
+# pyhegp summary file version 1
+# number-of-samples 5
+chromosome	position	reference	mean	standard-deviation
+chr1	1	A	0	1
+chr2	19	G	2	3
+chrX	21	C	4	5
+chrX	21	T	4	5
-- 
cgit 1.4.1