Move source files and headers to separate directories.

* extent-sampling.h, gaussian-nd-random.h, nd-random.h, oracles.h,
utils.h: Move into include directory.
* extent-sampling.c, gaussian-nd-random.c, nd-random.c, oracles.c,
utils.c: Move into src directory.
* CMakeLists.txt: Set include as include directory. Look for source
files inside src directory.

1 files changed, 0 insertions, 181 deletions

diff --git a/utils.c b/utils.c
deleted file mode 100644
index 0e0205f..0000000
--- a/utils.c
+++ /dev/null
@@ -1,181 +0,0 @@
-#include <gsl/gsl_blas.h>
-#include <gsl/gsl_math.h>
-#include <gsl/gsl_randist.h>
-#include <gsl/gsl_sf.h>
-#include <gsl/gsl_sf_gamma.h>
-#include "utils.h"
-
-// This function exists so that guile code can access the value of
-// M_PI as provided by <gsl_math.h>.
-double pi ()
-{
-  /**
-   @return Value of pi
-  **/
-  return M_PI;
-}
-
-double volume_of_ball (unsigned int dimension)
-{
-  /**
-     @param dimension Dimension of the ball (2 for a circle, 3 for a sphere, etc.)
-     @return Volume of the unit ball
-   **/
-  return exp(ln_volume_of_ball(dimension));
-}
-
-double ln_volume_of_ball (unsigned int dimension)
-{
-  /**
-     @param dimension Dimension of the ball (2 for a circle, 3 for a sphere, etc.)
-     @return Natural logarithm of the volume of the unit ball
-   **/
-  return (dimension/2.0)*M_LNPI - gsl_sf_lngamma(1 + dimension/2.0);
-}
-
-double surface_area_of_ball (unsigned int dimension)
-{
-  /**
-     @param dimension Dimension of the ball (2 for a circle, 3 for a sphere, etc.)
-     @return Surface area of the unit ball
-   **/
-  return dimension * volume_of_ball(dimension);
-}
-
-double ln_surface_area_of_ball (unsigned int dimension)
-{
-  /**
-     @param dimension Dimension of the ball (2 for a circle, 3 for a sphere, etc.)
-     @return Natural logarithm of the surface area of the unit ball
-   **/
-  return log(dimension) + ln_volume_of_ball(dimension);
-}
-
-double lower_incomplete_gamma (double s, double x)
-{
-  return gsl_sf_gamma(s) * gsl_sf_gamma_inc_P(s, x);
-}
-
-double angle_between_vectors (const gsl_vector* x, const gsl_vector* y)
-{
-  /**
-     @param x Vector 1
-     @param y Vector 2
-     @return Angle between the two vectors in the range [0, pi]
-  **/
-  double dot_product;
-  gsl_blas_ddot(x, y, &dot_product);
-  // TODO: Is this a valid floating point comparison?
-  if (dot_product != 0)
-    return acos(dot_product / gsl_blas_dnrm2(x) / gsl_blas_dnrm2(y));
-  else return 0;
-}
-
-double dot_product (const gsl_vector* x, const gsl_vector* y)
-{
-  /**
-     @param x Vector 1
-     @param y Vector 2
-     @return Dot product between the two vectors
-  **/
-  double result;
-  gsl_blas_ddot(x, y, &result);
-  return result;
-}
-
-double gaussian_pdf (double x)
-{
-  /**
-     @param x
-     @return exp(-x^2/2) / sqrt(2*pi)
-   **/
-  return gsl_ran_gaussian_pdf(x, 1.0);
-}
-
-double gaussian_cdf (double x)
-{
-  /**
-     @param x
-     @return int_{-inf}^x gaussian_pdf(t) dt
-   **/
-  return 0.5*(1 + gsl_sf_erf(x/M_SQRT2));
-}
-
-double rerror (double approx, double exact)
-{
-  /**
-     @param approx Approximate value
-     @param exact Exact value
-     @return Relative error
-  **/
-  return fabs(1 - approx/exact);
-}
-
-double gprate (double start, double last, unsigned int n)
-{
-  /**
-     @param start First (0th) term of the geometric progression
-     @param last Last ('N-1'th) term of the geometric progression
-     @param n Number of terms in the geometric progression
-     @return The multiplicative factor of the geometric progression
-   **/
-  return pow(last/start, 1.0/(n - 1));
-}
-
-double gpterm (double a, double r, int n)
-{
-  /**
-     @param a First (0th) term of the geometric progression
-     @param r Factor of the geometric progression
-     @return The Nth term of the geometric progression, with N starting from 0
-   **/
-  return a * gsl_pow_uint(r, n);
-}
-
-#define BISECTION_EPSABS 0
-#define BISECTION_EPSREL 1e-6
-#define BISECTION_MAX_ITERATIONS 1000
-#define BISECTION_FUNCTION_EPSABS 1e-9
-double bisection (gsl_function* f, double a, double b)
-{
-  const gsl_root_fsolver_type* T = gsl_root_fsolver_bisection;
-  gsl_root_fsolver* s = gsl_root_fsolver_alloc(T);
-  double solution;
-  int status;
-
-  void error_handler (const char* reason, const char* file, int line, int gsl_errno)
-  {
-    fprintf(stderr, "Bisection error handler invoked.\n");
-    fprintf(stderr, "f(%g) = %g\n", a, GSL_FN_EVAL(f, a));
-    fprintf(stderr, "f(%g) = %g\n", b, GSL_FN_EVAL(f, b));
-    fprintf(stderr, "gsl: %s:%d: ERROR: %s\n", file, line, reason);
-    abort();
-  }
-
-  gsl_error_handler_t* old_handler = gsl_set_error_handler(error_handler);
-  gsl_root_fsolver_set(s, f, a, b);
-  do {
-    status = gsl_root_fsolver_iterate (s);
-    solution = gsl_root_fsolver_root (s);
-    a = gsl_root_fsolver_x_lower (s);
-    b = gsl_root_fsolver_x_upper (s);
-    status = gsl_root_test_interval (a, b, BISECTION_EPSABS, BISECTION_EPSREL);
-  } while (status == GSL_CONTINUE);
-  gsl_root_fsolver_free(s);
-  gsl_set_error_handler(old_handler);
-  return solution;
-}
-
-double bisection_rlimit (gsl_function* f, double a, double b)
-{
-  int sign = SIGNUM(GSL_FN_EVAL(f, a));
-  for (int i=0; i<BISECTION_MAX_ITERATIONS; i++)
-    if (sign*GSL_FN_EVAL(f, b) > 0) b *= 2;
-    else return b;
-  fprintf(stderr, "Bisection bracketing failed\n");
-  exit(1);
-}
-#undef BISECTION_EPSABS
-#undef BISECTION_EPSREL
-#undef BISECTION_MAX_ITERATIONS
-#undef BISECTION_FUNCTION_EPSABS