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#!/usr/bin/env cwl-runner
cwlVersion: v1.1
class: Workflow
doc: "Workflow to go from YAML (metadata) + FASTA (sequence) to TTL (metadata)"
inputs:
path_fasta:
type: string
doc: input fasta to validate
format_to_check:
type: string
default: text/fasta
steps:
check_format:
in:
path_fasta: path_fasta
format_to_check: format_to_check
doc: the input has to be a valid FASTA format file
out: []
run: check_format.cwl
check_sequence:
in:
path_fasta: path_fasta
doc: the input sequence has to be enough similar to the reference
out: []
run: check_sequence.cwl
outputs: []
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