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#!/usr/bin/env cwl-runner
cwlVersion: v1.1
class: CommandLineTool
baseCommand: python
inputs:
main_py_script:
type: File
inputBinding:
position: 1
newick:
type: string
inputBinding:
position: 2
newick_dimensions:
type: int
inputBinding:
position: 3
prefix: -d
newick_coverage_matrix:
type: File
inputBinding:
position: 3
newick_metadata:
type: string
inputBinding:
position: 4
newick_tree:
type: string
inputBinding:
position: 5
outputs:
metadata_out:
type: File
outputBinding:
glob: 'metadata.tsv'
newick_tree_out:
type: File
outputBinding:
glob: '*.nwk'
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