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#!/usr/bin/env cwl-runner
cwlVersion: v1.1
class: CommandLineTool
baseCommand: odgi
inputs:
odgi_paths:
type: string
inputBinding:
position: 1
odgi_graph:
type: File
inputBinding:
position: 2
prefix: -i
haplotypes:
type: boolean
inputBinding:
position: 4
prefix: -H
threads:
type: int
inputBinding:
position: 5
prefix: -t
outputs:
coverage_matrix:
type: stdout
stdout: coverage.tsv
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