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#!/usr/bin/env cwl-runner
cwlVersion: v1.1
class: CommandLineTool
baseCommand: bash
requirements:
InitialWorkDirRequirement:
listing:
- $(inputs.dataDir)
inputs:
nextstrain_bash_script:
type: File
inputBinding:
position: 1
newick_tree_2:
type: File
inputBinding:
position: 2
metadata_newick:
type: File
inputBinding:
position: 3
dataDir:
type: Directory
outputs:
newick_json:
type: File
outputBinding:
glob: 'covid.json'
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