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cwlVersion: v1.1
class: CommandLineTool
inputs:
readsFA: File
stdout: $(inputs.readsFA.nameroot).g6.gfa
script:
type: File
default: {class: File, location: relabel-seqs.py}
outputs:
spoaGFA:
type: stdout
requirements:
InlineJavascriptRequirement: {}
ShellCommandRequirement: {}
hints:
DockerRequirement:
dockerPull: "quay.io/biocontainers/spoa:3.0.2--hc9558a2_0"
ResourceRequirement:
coresMin: 1
ramMin: $(15 * 1024)
outdirMin: $(Math.ceil(inputs.readsFA.size/(1024*1024*1024) + 20))
baseCommand: spoa
arguments: [
$(inputs.readsFA),
-G,
-g, '-6'
]
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