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cwlVersion: v1.1
class: CommandLineTool
inputs:
readsFA: File[]
subjects: string[]
outputs:
relabeledSeqs:
type: File
outputBinding:
glob: relabeledSeqs.fasta
originalLabels:
type: File
outputBinding:
glob: originalLabels.ttl
requirements:
InlineJavascriptRequirement: {}
InitialWorkDirRequirement:
listing:
- entry: {$include: relabel-seqs.py}
entryname: relabel-seqs.py
hints:
DockerRequirement:
dockerPull: commonworkflowlanguage/cwltool_module
stdout:
baseCommand: [python, relabel-seqs.py]
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