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|
#!/usr/bin/env cwl-runner
class: CommandLineTool
cwlVersion: v1.1
hints:
DockerRequirement:
dockerPull: spodgi/spodgi
requirements:
InlineJavascriptRequirement: {}
ShellCommandRequirement: {}
inputs:
- id: odgi
type: File
- id: output_name
type: string?
stdout: $(inputs.output_name || inputs.odgi.nameroot+'.ttl.xz')
arguments:
[odgi_to_rdf.py, $(inputs.odgi), "-",
{valueFrom: "|", shellQuote: false},
xz, --stdout]
outputs:
- id: rdf
type: stdout
|
