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cwlVersion: v1.1
class: CommandLineTool
inputs:
inputODGI: File
outputs:
odgiPNG:
type: File
outputBinding:
glob: $(inputs.inputODGI.nameroot).png
requirements:
InlineJavascriptRequirement: {}
hints:
DockerRequirement:
dockerPull: "quay.io/biocontainers/odgi:v0.3--py37h8b12597_0"
ResourceRequirement:
coresMin: 4
ramMin: $(7 * 1024)
outdirMin: 1
baseCommand: [odgi, viz]
arguments: [-i, $(inputs.inputODGI),
-o, $(inputs.inputODGI.nameroot).png,
-x, "50000",
-y, "500",
-R,
-P, "4"]
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