1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
|
cwlVersion: v1.1
class: CommandLineTool
inputs:
inputGFA: File
outputs:
odgiGraph:
type: File
outputBinding:
glob: $(inputs.inputGFA.nameroot).unchop.sorted.odgi
requirements:
InlineJavascriptRequirement: {}
ShellCommandRequirement: {}
hints:
DockerRequirement:
dockerPull: "quay.io/biocontainers/odgi:v0.3--py37h8b12597_0"
ResourceRequirement:
coresMin: 4
ramMin: $(7 * 1024)
outdirMin: $(Math.ceil((inputs.inputGFA.size/(1024*1024*1024)+1) * 2))
InitialWorkDirRequirement:
listing:
- entry: $(inputs.inputGFA)
writable: true
arguments: [odgi, build, -g, $(inputs.inputGFA), -o, -,
{shellQuote: false, valueFrom: "|"},
odgi, unchop, -i, -, -o, -,
{shellQuote: false, valueFrom: "|"},
odgi, sort, -i, -, -p, s, -o, $(inputs.inputGFA.nameroot).unchop.sorted.odgi
]
|
