aboutsummaryrefslogtreecommitdiff
path: root/workflows/pangenome-generate/merge-metadata.cwl
blob: fcefe32a0318a23dea636d7737b18b2e06fa6d73 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
cwlVersion: v1.1
class: CommandLineTool
hints:
  DockerRequirement:
    dockerPull: commonworkflowlanguage/cwltool_module
inputs:
  metadata: File[]
  metadataSchema: File
  subjects: string[]
  dups: File?
  originalLabels: File
outputs:
  merged: stdout
stdout: mergedmetadata.ttl
requirements:
  InitialWorkDirRequirement:
    listing:
      - entry: {$include: merge-metadata.py}
        entryname: merge-metadata.py
baseCommand: [python3, merge-metadata.py]