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#!/usr/bin/env cwl-runner
class: CommandLineTool
cwlVersion: v1.1
hints:
DockerRequirement:
dockerPull: "quay.io/biocontainers/bcftools:1.10.2--hd2cd319_0"
InitialWorkDirRequirement:
listing:
- $(inputs.bcf)
baseCommand: bcftools
arguments:
- index
- $(inputs.bcf)
inputs:
- id: bcf
type: File
outputs:
- id: indexed
type: File
outputBinding:
glob: "$(inputs.bcf.basename)"
secondaryFiles:
- .csi
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