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#!/usr/bin/env cwl-runner
class: CommandLineTool
cwlVersion: v1.1
hints:
DockerRequirement:
dockerPull: "quay.io/biocontainers/bcftools:1.10.2--hd2cd319_0"
baseCommand: bcftools
arguments:
- concat
- -Ou
- -o
- $(inputs.output_name)
- $(inputs.bcf_files)
inputs:
- id: output_name
type: string
default: "merged.bcf"
- id: bcf_files
type: File[]
outputs:
- id: merged_bcf
type: File
outputBinding:
glob: "$(inputs.output_name)"
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