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#!/usr/bin/env python3
import os
import sys
import setuptools.command.egg_info as egg_info_cmd
from setuptools import setup
SETUP_DIR = os.path.dirname(__file__)
README = os.path.join(SETUP_DIR, "README.md")
try:
import gittaggers
tagger = gittaggers.EggInfoFromGit
except ImportError:
tagger = egg_info_cmd.egg_info
install_requires = ["arvados-python-client", "schema-salad", "python-magic", "pyshex"]
web_requires = ["flask", "pyyaml"]
needs_pytest = {"pytest", "test", "ptr"}.intersection(sys.argv)
pytest_runner = ["pytest < 6", "pytest-runner < 5"] if needs_pytest else []
setup(
name="bh20-seq-uploader",
version="1.0",
description="Biohackathon sequence uploader",
long_description=open(README).read(),
long_description_content_type="text/markdown",
author="Peter Amstutz",
author_email="peter.amstutz@curii.com",
license="Apache 2.0",
packages=["bh20sequploader", "bh20seqanalyzer", "bh20simplewebuploader"],
package_data={"bh20sequploader": ["bh20seq-schema.yml",
"bh20seq-options.yml",
"bh20seq-shex.rdf",
"validation/formats",
"SARS-CoV-2-reference.fasta",],
},
install_requires=install_requires,
extras_require={
'web': web_requires
},
setup_requires=[] + pytest_runner,
tests_require=["pytest<5"],
entry_points={
"console_scripts": [
"bh20-seq-uploader=bh20sequploader.main:main",
"bh20-seq-analyzer=bh20seqanalyzer.main:main"
]
},
zip_safe=True,
cmdclass={"egg_info": tagger},
python_requires=">=3.5, <4",
)
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