| Mode | Name | Size | |
|---|---|---|---|
| -rw-r--r-- | README.md | 485 | logplain |
| -rw-r--r-- | cleanup.py | 2140 | logplain |
| d--------- | create_sra_metadata | 116 | logplain |
| d--------- | db_enrichment | 170 | logplain |
| -rw-r--r-- | delete_entries_on_arvados.py | 1078 | logplain |
| d--------- | dict_ontology_standardization | 262 | logplain |
| d--------- | docker | 38 | logplain |
| d--------- | esr_samples | 164 | logplain |
| -rw-r--r-- | fastq2fasta.scm | 8911 | logplain |
| -rw-r--r-- | fetch_from_genbank.cwl | 1133 | logplain |
| -rwxr-xr-x | foreach.sh | 444 | logplain |
| -rw-r--r-- | import.cwl | 668 | logplain |
| -rw-r--r-- | import_from_genbank.cwl | 676 | logplain |
| -rw-r--r-- | import_to_arvados.py | 318 | logplain |
| -rw-r--r-- | split_into_arrays.cwl | 731 | logplain |
| d--------- | submit_ebi / example | 34 | logplain |
| d--------- | update_virtuoso | 48 | logplain |
| -rw-r--r-- | upload.cwl | 299 | logplain |
| d--------- | uthsc_samples | 123 | logplain |
| -rw-r--r-- | utils.py | 2192 | logplain |
| -rw-r--r-- | variant-calling-bowtie-bwa-mem.scm | 5340 | logplain |
 |
index : bh20-seq-resource | |
| Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis |
| aboutsummaryrefslogtreecommitdiff |