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cwlVersion: v1.1
class: Workflow
inputs:
existing_metadata_from_nuccore:
type: Directory?
outputs: []
requirements:
ScatterFeatureRequirement: {}
steps:
fetch_from_genbank:
in:
existing_metadata_from_nuccore: existing_metadata_from_nuccore
out: [fasta_and_yaml, metadata_from_nuccore, accessions]
run: fetch_from_genbank.cwl
split_into_arrays:
in:
dir: fetch_from_genbank/fasta_and_yaml
out: [fasta, metadata]
run: split_into_arrays.cwl
upload:
in:
fasta: split_into_arrays/fasta
metadata: split_into_arrays/metadata
out: []
scatter: [fasta, metadata]
scatterMethod: dotproduct
run: upload.cwl
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