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id: placeholder
host:
host_species: "$host_species"
sample:
sample_id: "$sample_id"
collection_date: "$collection_date"
collection_location: "$collection_location"
specimen_source: ["$specimen_source"]
virus:
virus_species: "$virus_species"
technology:
sample_sequencing_technology: ["http://www.ebi.ac.uk/efo/EFO_0008632"]
alignment_protocol: "https://github.com/ESR-NZ/NZ_SARS-CoV-2_genomics"
assembly_method: "http://purl.obolibrary.org/obo/GENEPIO_0001628"
additional_technology_information: "Artic V3 workflow"
submitter:
authors: ["Jemma L Geoghegan", "Xiaoyun Ren", "Matthew Storey", "James Hadfield", "Lauren Jelley", "Sarah Jefferies", "Jill Sherwood", "Shevaun Paine", "Sue Huang", "Jordan Douglas", "Fabio K Mendes", "Andrew Sporle", "Michael G Baker", "David R Murdoch", "Nigel French", "Colin R Simpson", "David Welch", "Alexei J Drummond", "Edward C Holmes", "Sebastian Duchene", "Joep de Ligt"]
submitter_name: ["Joep de Ligt"]
submitter_address: "PO Box 50348, Porirua 5240, New Zealand"
originating_lab: "ESR"
submitter_sample_id: "$submitter_sample_id"
publication: "https://doi.org/10.1101/2020.08.05.20168930"
submitter_orcid: ["https://orcid.org/0000-0003-0970-0153"]
additional_submitter_information: "2020-08-20"
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