pages/index.html


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<!DOCTYPE html>
<html>
    <head>
        <meta charset="UTF-8">
        <meta name="viewport" content="width=device-width, initial-scale=1">
        <title>Simple Web Uploader for Public SARS-CoV-2 Sequence Resource</title>
    </head>
    <body>
        <h1>Simple Web Uploader for Public SARS-CoV-2 Sequence Resource</h1>
        <hr>
        <p>
            This tool can be used to upload sequenced genomes of SARS-CoV-2 samples to the <a href="https://workbench.lugli.arvadosapi.com/collections/lugli-4zz18-z513nlpqm03hpca">Public SARS-CoV-2 Sequence Resource</a>. Your uploaded sequence will automatically be processed and incorporated into the public pangenome.
        </p>
        <hr>
        <form action="/submit" method="POST" enctype="multipart/form-data">
            <label for="fasta">Select FASTA file for assembled genome (max 1MB):</label>
            <br>
            <input type="file" id="fasta" name="fasta" accept=".fa,.fasta,.fna">
            <br>
            <label for="metadata">Select JSON metadata file following <a href="https://raw.githubusercontent.com/arvados/bh20-seq-resource/master/bh20sequploader/bh20seq-schema.yml">this schema</a> (max 1MB):</label>
            <br>
            <input type="file" id="metadata" name="metadata" accept=".json">
            <br>
            <input type="submit" value="Add to Pangenome">
        </form>
        <hr>
        <small><a href="https://github.com/adamnovak/bh20-simple-web-uploader">Source</a> &middot; Made for <a href="https://github.com/virtual-biohackathons/covid-19-bh20">COVID-19-BH20</a></small>
    </body>
</html>