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<!DOCTYPE html>
<html>
<head>
<meta charset="UTF-8">
<meta name="viewport" content="width=device-width, initial-scale=1">
<title>Simple Web Uploader for Public SARS-CoV-2 Sequence Resource</title>
</head>
<body>
<h1>Simple Web Uploader for Public SARS-CoV-2 Sequence Resource</h1>
<hr>
<p>
This tool can be used to upload sequenced genomes of SARS-CoV-2 samples to the <a href="https://workbench.lugli.arvadosapi.com/collections/lugli-4zz18-z513nlpqm03hpca">Public SARS-CoV-2 Sequence Resource</a>. Your uploaded sequence will automatically be processed and incorporated into the public pangenome.
</p>
<hr>
<form action="/submit" method="POST" enctype="multipart/form-data">
<label for="fasta">Select FASTA file for assembled genome (max 1MB):</label>
<br>
<input type="file" id="fasta" name="fasta" accept=".fa,.fasta,.fna">
<br>
<label for="metadata">Select JSON-LD metadata file following <a href="https://raw.githubusercontent.com/arvados/bh20-seq-resource/master/bh20sequploader/bh20seq-schema.yml">this schema</a> (max 1MB):</label>
<br>
<input type="file" id="metadata" name="metadata" accept=".json">
<br>
<input type="submit" value="Add to Pangenome">
</form>
<hr>
</body>
</html>
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